J5_6OF6_011
3D structure
- PDB id
- 6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6OF6|1|XA|A|109, 6OF6|1|XA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OF6_011 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0869
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6OF6|1|XA|C|58
6OF6|1|XA|A|59
6OF6|1|XA|A|60
6OF6|1|XA|G|61
*
6OF6|1|XA|C|106
6OF6|1|XA|G|107
6OF6|1|XA|G|108
6OF6|1|XA|A|109
6OF6|1|XA|C|110
6OF6|1|XA|G|111
6OF6|1|XA|G|112
6OF6|1|XA|G|113
*
6OF6|1|XA|C|314
6OF6|1|XA|A|315
6OF6|1|XA|G|316
*
6OF6|1|XA|C|337
6OF6|1|XA|A|338
6OF6|1|XA|C|339
*
6OF6|1|XA|G|350
6OF6|1|XA|G|351
6OF6|1|XA|C|352
6OF6|1|XA|A|353
6OF6|1|XA|G|354
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XP
- 30S ribosomal protein S16
- Chain XT
- 30S ribosomal protein S20
- Chain YO
- 50S ribosomal protein L14
- Chain YT
- 50S ribosomal protein L19
Coloring options: