J5_6OGG_005

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC

Length

40 nucleotides

Bulged bases

6OGG|1|1|A|2062, 6OGG|1|1|A|2448, 6OGG|1|1|U|2449, 6OGG|1|1|G|2505, 6OGG|1|1|U|2506, 6OGG|1|1|U|2609, 6OGG|1|1|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGG|1|1|G|2057
6OGG|1|1|A|2058
6OGG|1|1|A|2059
6OGG|1|1|A|2060
6OGG|1|1|G|2061
6OGG|1|1|A|2062
6OGG|1|1|C|2063
6OGG|1|1|C|2064
*
6OGG|1|1|G|2446
6OGG|1|1|G|2447
6OGG|1|1|A|2448
6OGG|1|1|U|2449
6OGG|1|1|A|2450
6OGG|1|1|A|2451
6OGG|1|1|C|2452
6OGG|1|1|A|2453
6OGG|1|1|G|2454
*
6OGG|1|1|C|2498
6OGG|1|1|C|2499
6OGG|1|1|U|2500
6OGG|1|1|C|2501
6OGG|1|1|G|2502
6OGG|1|1|A|2503
6OGG|1|1|U|2504
6OGG|1|1|G|2505
6OGG|1|1|U|2506
6OGG|1|1|C|2507
*
6OGG|1|1|G|2582
6OGG|1|1|G|2583
6OGG|1|1|U|2584
6OGG|1|1|U|2585
6OGG|1|1|U|2586
6OGG|1|1|A|2587
6OGG|1|1|G|2588
*
6OGG|1|1|C|2606
6OGG|1|1|G|2607
6OGG|1|1|G|2608
6OGG|1|1|U|2609
6OGG|1|1|C|2610
6OGG|1|1|C|2611

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptide chain release factor 2

Chain B

50S ribosomal protein L32

Chain b

50S ribosomal protein L2

Chain c

50S ribosomal protein L3

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15

Chain m

50S ribosomal protein L16