J5_6OGG_006
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUUA*UUUG*CUC*GAG*CGGAUAAAA
- Length
- 23 nucleotides
- Bulged bases
- 6OGG|1|1|U|2076, 6OGG|1|1|U|2245, 6OGG|1|1|G|2428, 6OGG|1|1|G|2429, 6OGG|1|1|A|2430, 6OGG|1|1|U|2431, 6OGG|1|1|A|2432, 6OGG|1|1|A|2433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OGG|1|1|U|2074
6OGG|1|1|U|2075
6OGG|1|1|U|2076
6OGG|1|1|A|2077
*
6OGG|1|1|U|2243
6OGG|1|1|U|2244
6OGG|1|1|U|2245
6OGG|1|1|G|2246
*
6OGG|1|1|C|2258
6OGG|1|1|U|2259
6OGG|1|1|C|2260
*
6OGG|1|1|G|2280
6OGG|1|1|A|2281
6OGG|1|1|G|2282
*
6OGG|1|1|C|2427
6OGG|1|1|G|2428
6OGG|1|1|G|2429
6OGG|1|1|A|2430
6OGG|1|1|U|2431
6OGG|1|1|A|2432
6OGG|1|1|A|2433
6OGG|1|1|A|2434
6OGG|1|1|A|2435
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain b
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L28
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