J5_6OGI_001

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6OGI|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OGI_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1094

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OGI|1|1|C|47
6OGI|1|1|G|48
6OGI|1|1|A|49
6OGI|1|1|U|50
6OGI|1|1|G|51
6OGI|1|1|A|52
6OGI|1|1|A|53
6OGI|1|1|G|54
*
6OGI|1|1|C|116
6OGI|1|1|G|117
6OGI|1|1|A|118
6OGI|1|1|A|119
6OGI|1|1|U|120
6OGI|1|1|G|121
*
6OGI|1|1|C|130
6OGI|1|1|A|131
*
6OGI|1|1|U|148
6OGI|1|1|A|149
6OGI|1|1|U|150
*
6OGI|1|1|A|176
6OGI|1|1|G|177
6OGI|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34