J5_6OIG_001
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAGG*CGAUGAAG*UGAACG*CG*CAUG
- Length
- 24 nucleotides
- Bulged bases
- 6OIG|1|8|U|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OIG|1|5|U|19
6OIG|1|5|A|20
6OIG|1|5|G|21
6OIG|1|5|G|22
*
6OIG|1|8|C|35
6OIG|1|8|G|36
6OIG|1|8|A|37
6OIG|1|8|U|38
6OIG|1|8|G|39
6OIG|1|8|A|40
6OIG|1|8|A|41
6OIG|1|8|G|42
*
6OIG|1|8|U|102
6OIG|1|8|G|103
6OIG|1|8|A|104
6OIG|1|8|A|105
6OIG|1|8|C|106
6OIG|1|8|G|107
*
6OIG|1|8|C|115
6OIG|1|8|G|116
*
6OIG|1|8|C|137
6OIG|1|8|A|138
6OIG|1|8|U|139
6OIG|1|8|G|140
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: