J5_6OIG_004
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAAGUCGGCAAAAUAG*UG*UG*CGGACAAGG*CACUGUC
- Length
- 37 nucleotides
- Bulged bases
- 6OIG|1|5|G|2116, 6OIG|1|5|G|2121, 6OIG|1|5|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OIG|1|5|G|1898
6OIG|1|5|G|1899
6OIG|1|5|A|1900
6OIG|1|5|A|1901
6OIG|1|5|G|1902
6OIG|1|5|U|1903
6OIG|1|5|C|1904
6OIG|1|5|G|1905
6OIG|1|5|G|1906
6OIG|1|5|C|1907
6OIG|1|5|A|1908
6OIG|1|5|A|1909
6OIG|1|5|A|1910
6OIG|1|5|A|1911
6OIG|1|5|U|1912
6OIG|1|5|A|1913
6OIG|1|5|G|1914
*
6OIG|1|5|U|1938
6OIG|1|5|G|1939
*
6OIG|1|5|U|2109
6OIG|1|5|G|2110
*
6OIG|1|5|C|2114
6OIG|1|5|G|2115
6OIG|1|5|G|2116
6OIG|1|5|A|2117
6OIG|1|5|C|2118
6OIG|1|5|A|2119
6OIG|1|5|A|2120
6OIG|1|5|G|2121
6OIG|1|5|G|2122
*
6OIG|1|5|C|2331
6OIG|1|5|A|2332
6OIG|1|5|C|2333
6OIG|1|5|U|2334
6OIG|1|5|G|2335
6OIG|1|5|U|2336
6OIG|1|5|C|2337
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain R
- 60S ribosomal protein L19-A
- Chain V
- 60S ribosomal protein L23-A
- Chain W
- 60S ribosomal protein L24-A
Coloring options: