J5_6OIG_007
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6OIG|1|5|G|2418, 6OIG|1|5|A|2799, 6OIG|1|5|G|2800, 6OIG|1|5|A|2801, 6OIG|1|5|A|2802
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OIG_007 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3112
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6OIG|1|5|U|2416
6OIG|1|5|U|2417
6OIG|1|5|G|2418
6OIG|1|5|A|2419
*
6OIG|1|5|U|2611
6OIG|1|5|U|2612
6OIG|1|5|U|2613
6OIG|1|5|G|2614
*
6OIG|1|5|C|2627
6OIG|1|5|A|2628
*
6OIG|1|5|U|2650
6OIG|1|5|G|2651
*
6OIG|1|5|C|2798
6OIG|1|5|A|2799
6OIG|1|5|G|2800
6OIG|1|5|A|2801
6OIG|1|5|A|2802
6OIG|1|5|A|2803
6OIG|1|5|A|2804
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L42-A
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