J5_6OIG_008
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6OIG|1|8|U|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OIG_008 not in the Motif Atlas
- Homologous match to J5_8CRE_001
- Geometric discrepancy: 0.1782
- The information below is about J5_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6OIG|1|5|A|20
6OIG|1|5|G|21
6OIG|1|5|G|22
*
6OIG|1|8|C|35
6OIG|1|8|G|36
6OIG|1|8|A|37
6OIG|1|8|U|38
6OIG|1|8|G|39
6OIG|1|8|A|40
6OIG|1|8|A|41
6OIG|1|8|G|42
*
6OIG|1|8|U|102
6OIG|1|8|G|103
6OIG|1|8|A|104
6OIG|1|8|A|105
6OIG|1|8|C|106
6OIG|1|8|G|107
*
6OIG|1|8|C|115
6OIG|1|8|G|116
*
6OIG|1|8|C|137
6OIG|1|8|A|138
6OIG|1|8|U|139
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
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