J5_6OJ2_010

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OJ2_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0868

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OJ2|1|XA|C|36
6OJ2|1|XA|U|37
6OJ2|1|XA|G|38
6OJ2|1|XA|G|39
*
6OJ2|1|XA|C|403
6OJ2|1|XA|U|404
6OJ2|1|XA|U|405
6OJ2|1|XA|G|406
*
6OJ2|1|XA|C|436
6OJ2|1|XA|U|437
6OJ2|1|XA|G|438
6OJ2|1|XA|A|439
6OJ2|1|XA|A|440
6OJ2|1|XA|C|442
*
6OJ2|1|XA|G|492
6OJ2|1|XA|G|493
6OJ2|1|XA|U|494
6OJ2|1|XA|A|495
6OJ2|1|XA|A|496
6OJ2|1|XA|U|497
6OJ2|1|XA|A|498
6OJ2|1|XA|G|500
*
6OJ2|1|XA|C|545
6OJ2|1|XA|G|546
6OJ2|1|XA|A|547
6OJ2|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12