J5_6OKK_003
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAG*CGAACGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6OKK|1|A|A|95, 6OKK|1|A|C|430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OKK_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0747
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OKK|1|A|C|54
6OKK|1|A|A|55
6OKK|1|A|A|56
6OKK|1|A|G|57
*
6OKK|1|A|C|92
6OKK|1|A|G|93
6OKK|1|A|A|94
6OKK|1|A|A|95
6OKK|1|A|C|96
6OKK|1|A|G|97
6OKK|1|A|G|98
6OKK|1|A|C|99
*
6OKK|1|A|G|392
6OKK|1|A|A|393
6OKK|1|A|G|394
*
6OKK|1|A|C|415
6OKK|1|A|A|416
6OKK|1|A|C|417
*
6OKK|1|A|G|428
6OKK|1|A|G|429
6OKK|1|A|C|430
6OKK|1|A|A|431
6OKK|1|A|G|432
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S9
- Chain F
- 40S ribosomal protein S4
- Chain H
- 40S ribosomal protein S6
- Chain L
- 40S ribosomal protein S8
- Chain a
- 40S ribosomal protein S24
Coloring options: