3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUUGU*AAAUAACAAUACAG*CCUGUAAUUGGAAUGAG*CGAGGAUCCAU*AUA(OMG)
Length
51 nucleotides
Bulged bases
6OLF|1|S2|A|555, 6OLF|1|S2|A|560, 6OLF|1|S2|G|588, 6OLF|1|S2|G|589
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OLF|1|S2|C|30
6OLF|1|S2|U|31
6OLF|1|S2|U|32
6OLF|1|S2|G|33
6OLF|1|S2|U|34
*
6OLF|1|S2|A|521
6OLF|1|S2|A|522
6OLF|1|S2|A|523
6OLF|1|S2|U|524
6OLF|1|S2|A|525
6OLF|1|S2|A|526
6OLF|1|S2|C|527
6OLF|1|S2|A|528
6OLF|1|S2|A|529
6OLF|1|S2|U|530
6OLF|1|S2|A|531
6OLF|1|S2|C|532
6OLF|1|S2|A|533
6OLF|1|S2|G|534
*
6OLF|1|S2|C|549
6OLF|1|S2|C|550
6OLF|1|S2|U|551
6OLF|1|S2|G|552
6OLF|1|S2|U|553
6OLF|1|S2|A|554
6OLF|1|S2|A|555
6OLF|1|S2|U|556
6OLF|1|S2|U|557
6OLF|1|S2|G|558
6OLF|1|S2|G|559
6OLF|1|S2|A|560
6OLF|1|S2|A|561
6OLF|1|S2|U|562
6OLF|1|S2|G|563
6OLF|1|S2|A|564
6OLF|1|S2|G|565
*
6OLF|1|S2|C|585
6OLF|1|S2|G|586
6OLF|1|S2|A|587
6OLF|1|S2|G|588
6OLF|1|S2|G|589
6OLF|1|S2|A|590
6OLF|1|S2|U|591
6OLF|1|S2|C|592
6OLF|1|S2|C|593
6OLF|1|S2|A|594
6OLF|1|S2|U|595
*
6OLF|1|S2|A|641
6OLF|1|S2|U|642
6OLF|1|S2|A|643
6OLF|1|S2|OMG|644

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain SX
40S ribosomal protein S23
Chain Se
40S ribosomal protein S30

Coloring options:

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