J5_6OPE_001

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OPE_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0838

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OPE|1|QA|C|36
6OPE|1|QA|U|37
6OPE|1|QA|G|38
6OPE|1|QA|G|39
*
6OPE|1|QA|C|403
6OPE|1|QA|U|404
6OPE|1|QA|U|405
6OPE|1|QA|G|406
*
6OPE|1|QA|C|436
6OPE|1|QA|U|437
6OPE|1|QA|G|438
6OPE|1|QA|A|439
6OPE|1|QA|A|440
6OPE|1|QA|C|442
*
6OPE|1|QA|G|492
6OPE|1|QA|G|493
6OPE|1|QA|U|494
6OPE|1|QA|A|495
6OPE|1|QA|A|496
6OPE|1|QA|U|497
6OPE|1|QA|A|498
6OPE|1|QA|G|500
*
6OPE|1|QA|C|545
6OPE|1|QA|G|546
6OPE|1|QA|A|547
6OPE|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9