J5_6OPE_012

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

6OPE|1|XA|A|109, 6OPE|1|XA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OPE_012 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0961

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6OPE|1|XA|C|58
6OPE|1|XA|A|59
6OPE|1|XA|A|60
6OPE|1|XA|G|61
*
6OPE|1|XA|C|106
6OPE|1|XA|G|107
6OPE|1|XA|G|108
6OPE|1|XA|A|109
6OPE|1|XA|C|110
6OPE|1|XA|G|111
6OPE|1|XA|G|112
6OPE|1|XA|G|113
*
6OPE|1|XA|C|314
6OPE|1|XA|A|315
6OPE|1|XA|G|316
*
6OPE|1|XA|C|337
6OPE|1|XA|A|338
6OPE|1|XA|C|339
*
6OPE|1|XA|G|350
6OPE|1|XA|G|351
6OPE|1|XA|C|352
6OPE|1|XA|A|353
6OPE|1|XA|G|354

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20

Chain YO

50S ribosomal protein L14

Chain YT

50S ribosomal protein L19