J5_6ORD_001

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ORD_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0714

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6ORD|1|QA|C|36
6ORD|1|QA|U|37
6ORD|1|QA|G|38
6ORD|1|QA|G|39
*
6ORD|1|QA|C|403
6ORD|1|QA|U|404
6ORD|1|QA|U|405
6ORD|1|QA|G|406
*
6ORD|1|QA|C|436
6ORD|1|QA|U|437
6ORD|1|QA|G|438
6ORD|1|QA|A|439
6ORD|1|QA|A|441
6ORD|1|QA|C|442
*
6ORD|1|QA|G|492
6ORD|1|QA|G|493
6ORD|1|QA|U|494
6ORD|1|QA|A|495
6ORD|1|QA|A|496
6ORD|1|QA|U|498
6ORD|1|QA|A|499
6ORD|1|QA|G|500
*
6ORD|1|QA|C|545
6ORD|1|QA|G|546
6ORD|1|QA|A|547
6ORD|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9