J5_6OSI_001

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OSI_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1417

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OSI|1|QA|C|36
6OSI|1|QA|U|37
6OSI|1|QA|G|38
6OSI|1|QA|G|39
*
6OSI|1|QA|C|403
6OSI|1|QA|U|404
6OSI|1|QA|U|405
6OSI|1|QA|G|406
*
6OSI|1|QA|C|436
6OSI|1|QA|U|437
6OSI|1|QA|G|438
6OSI|1|QA|A|440
6OSI|1|QA|A|441
6OSI|1|QA|C|442
*
6OSI|1|QA|G|492
6OSI|1|QA|G|493
6OSI|1|QA|U|494
6OSI|1|QA|A|495
6OSI|1|QA|A|497
6OSI|1|QA|U|498
6OSI|1|QA|A|499
6OSI|1|QA|G|500
*
6OSI|1|QA|C|545
6OSI|1|QA|G|546
6OSI|1|QA|A|547
6OSI|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9