J5_6OSI_012
3D structure
- PDB id
- 6OSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.14 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6OSI|1|XA|A|60, 6OSI|1|XA|A|109, 6OSI|1|XA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OSI_012 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1225
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6OSI|1|XA|C|58
6OSI|1|XA|A|59
6OSI|1|XA|A|60
6OSI|1|XA|G|61
*
6OSI|1|XA|C|106
6OSI|1|XA|G|107
6OSI|1|XA|G|108
6OSI|1|XA|A|109
6OSI|1|XA|C|110
6OSI|1|XA|G|111
6OSI|1|XA|G|112
6OSI|1|XA|G|113
*
6OSI|1|XA|C|314
6OSI|1|XA|A|315
6OSI|1|XA|G|316
*
6OSI|1|XA|C|337
6OSI|1|XA|A|338
6OSI|1|XA|C|339
*
6OSI|1|XA|G|350
6OSI|1|XA|G|351
6OSI|1|XA|C|352
6OSI|1|XA|A|353
6OSI|1|XA|G|354
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XP
- 30S ribosomal protein S16
- Chain XT
- 30S ribosomal protein S20
- Chain YO
- 50S ribosomal protein L14
- Chain YT
- 50S ribosomal protein L19
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