J5_6OTR_001

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OTR_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0768

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OTR|1|QA|C|36
6OTR|1|QA|U|37
6OTR|1|QA|G|38
6OTR|1|QA|G|39
*
6OTR|1|QA|C|403
6OTR|1|QA|U|404
6OTR|1|QA|U|405
6OTR|1|QA|G|406
*
6OTR|1|QA|C|436
6OTR|1|QA|U|437
6OTR|1|QA|G|438
6OTR|1|QA|A|439
6OTR|1|QA|A|440
6OTR|1|QA|C|442
*
6OTR|1|QA|G|492
6OTR|1|QA|G|493
6OTR|1|QA|U|494
6OTR|1|QA|A|495
6OTR|1|QA|A|496
6OTR|1|QA|U|497
6OTR|1|QA|A|498
6OTR|1|QA|G|500
*
6OTR|1|QA|C|545
6OTR|1|QA|G|546
6OTR|1|QA|A|547
6OTR|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9