J5_6OXA_001

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OXA_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0714

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OXA|1|QA|C|36
6OXA|1|QA|U|37
6OXA|1|QA|G|38
6OXA|1|QA|G|39
*
6OXA|1|QA|C|403
6OXA|1|QA|U|404
6OXA|1|QA|U|405
6OXA|1|QA|G|406
*
6OXA|1|QA|C|436
6OXA|1|QA|U|437
6OXA|1|QA|G|438
6OXA|1|QA|A|439
6OXA|1|QA|A|440
6OXA|1|QA|C|442
*
6OXA|1|QA|G|492
6OXA|1|QA|G|493
6OXA|1|QA|U|494
6OXA|1|QA|A|495
6OXA|1|QA|A|496
6OXA|1|QA|U|497
6OXA|1|QA|A|498
6OXA|1|QA|G|500
*
6OXA|1|QA|C|545
6OXA|1|QA|G|546
6OXA|1|QA|A|547
6OXA|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9