J5_6OXI_001
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OXI_001 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0905
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6OXI|1|QA|C|36
6OXI|1|QA|U|37
6OXI|1|QA|G|38
6OXI|1|QA|G|39
*
6OXI|1|QA|C|403
6OXI|1|QA|U|404
6OXI|1|QA|U|405
6OXI|1|QA|G|406
*
6OXI|1|QA|C|436
6OXI|1|QA|U|437
6OXI|1|QA|G|438
6OXI|1|QA|A|439
6OXI|1|QA|A|440
6OXI|1|QA|C|442
*
6OXI|1|QA|G|492
6OXI|1|QA|G|493
6OXI|1|QA|U|494
6OXI|1|QA|A|495
6OXI|1|QA|A|496
6OXI|1|QA|U|497
6OXI|1|QA|A|498
6OXI|1|QA|G|500
*
6OXI|1|QA|C|545
6OXI|1|QA|G|546
6OXI|1|QA|A|547
6OXI|1|QA|G|548
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QD
- 30S ribosomal protein S4
- Chain QL
- 30S ribosomal protein S12
- Chain YI
- 50S ribosomal protein L9
Coloring options: