J5_6OXI_016
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 6OXI|1|YA|G|1758, 6OXI|1|YA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OXI_016 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.1172
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6OXI|1|YA|G|1674
6OXI|1|YA|C|1675
6OXI|1|YA|A|1676
6OXI|1|YA|A|1677
6OXI|1|YA|G|1678
6OXI|1|YA|U|1679
6OXI|1|YA|U|1680
6OXI|1|YA|G|1681
6OXI|1|YA|G|1682
*
6OXI|1|YA|U|1706
6OXI|1|YA|G|1707
*
6OXI|1|YA|C|1751
6OXI|1|YA|C|1752
*
6OXI|1|YA|G|1756
6OXI|1|YA|U|1757
6OXI|1|YA|G|1758
6OXI|1|YA|A|1759
6OXI|1|YA|A|1760
6OXI|1|YA|C|1761
6OXI|1|YA|A|1762
6OXI|1|YA|G|1763
6OXI|1|YA|G|1764
*
6OXI|1|YA|C|1988
6OXI|1|YA|G|1989
6OXI|1|YA|C|1990
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YE
- 50S ribosomal protein L3
- Chain YO
- 50S ribosomal protein L14
- Chain YT
- 50S ribosomal protein L19
Coloring options: