J5_6P5J_003
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUCAGUCGGUCC*GGGAGU*AAUC*GGCCGUAC
- Length
- 36 nucleotides
- Bulged bases
- 6P5J|1|5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5J|1|5|G|2406
6P5J|1|5|G|2407
6P5J|1|5|U|2408
6P5J|1|5|U|2409
6P5J|1|5|C|2410
*
6P5J|1|5|G|2434
6P5J|1|5|G|2435
6P5J|1|5|U|2436
6P5J|1|5|C|2437
6P5J|1|5|A|2438
6P5J|1|5|G|2439
6P5J|1|5|U|2440
6P5J|1|5|C|2441
6P5J|1|5|G|2442
6P5J|1|5|G|2443
6P5J|1|5|U|2444
6P5J|1|5|C|2445
6P5J|1|5|C|2446
*
6P5J|1|5|G|2514
6P5J|1|5|G|2515
6P5J|1|5|G|2516
6P5J|1|5|A|2517
6P5J|1|5|G|2518
6P5J|1|5|U|2519
*
6P5J|1|5|A|2536
6P5J|1|5|A|2537
6P5J|1|5|U|2538
6P5J|1|5|C|2539
*
6P5J|1|5|G|2777
6P5J|1|5|G|2778
6P5J|1|5|C|2779
6P5J|1|5|C|2780
6P5J|1|5|G|2781
6P5J|1|5|U|2782
6P5J|1|5|A|2783
6P5J|1|5|C|2784
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AR
- eL19
- Chain AX
- eL23
- Chain Ag
- eL34
- Chain Ah
- eL35
- Chain Aj
- eL37
- Chain Ak
- eL38
- Chain Al
- eL39
Coloring options: