J5_6P5K_003

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

6P5K|1|2|G|126, 6P5K|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|2|G|123
6P5K|1|2|U|124
6P5K|1|2|C|125
6P5K|1|2|G|126
6P5K|1|2|C|127
6P5K|1|2|U|128
6P5K|1|2|C|129
6P5K|1|2|G|130
*
6P5K|1|2|C|182
6P5K|1|2|G|183
6P5K|1|2|G|184
6P5K|1|2|G|185
*
6P5K|1|2|U|214
6P5K|1|2|G|215
*
6P5K|1|2|C|310
6P5K|1|2|C|311
6P5K|1|2|G|312
*
6P5K|1|2|C|337
6P5K|1|2|G|338
6P5K|1|2|A|339
6P5K|1|2|C|340
6P5K|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain J

eS8