J5_6P5K_007
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6P5K|1|5|A|3908, 6P5K|1|5|A|4394, 6P5K|1|5|U|4395, 6P5K|1|5|G|4451, 6P5K|1|5|U|4452, 6P5K|1|5|U|4555, 6P5K|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5K|1|5|A|3903
6P5K|1|5|G|3904
6P5K|1|5|A|3905
6P5K|1|5|A|3906
6P5K|1|5|G|3907
6P5K|1|5|A|3908
6P5K|1|5|C|3909
6P5K|1|5|C|3910
*
6P5K|1|5|G|4392
6P5K|1|5|G|4393
6P5K|1|5|A|4394
6P5K|1|5|U|4395
6P5K|1|5|A|4396
6P5K|1|5|A|4397
6P5K|1|5|C|4398
6P5K|1|5|U|4399
6P5K|1|5|G|4400
*
6P5K|1|5|C|4444
6P5K|1|5|U|4445
6P5K|1|5|U|4446
6P5K|1|5|C|4447
6P5K|1|5|G|4448
6P5K|1|5|A|4449
6P5K|1|5|U|4450
6P5K|1|5|G|4451
6P5K|1|5|U|4452
6P5K|1|5|C|4453
*
6P5K|1|5|G|4528
6P5K|1|5|G|4529
6P5K|1|5|U|4530
6P5K|1|5|U|4531
6P5K|1|5|U|4532
6P5K|1|5|A|4533
6P5K|1|5|G|4534
*
6P5K|1|5|U|4552
6P5K|1|5|A|4553
6P5K|1|5|G|4554
6P5K|1|5|U|4555
6P5K|1|5|U|4556
6P5K|1|5|U|4557
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- uL2
- Chain AB
- uL3
- Chain AC
- uL4
- Chain Aa
- uL15
- Chain Ab
- eL29
Coloring options: