J5_6PC5_004

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6PC5|1|I|U|1758, 6PC5|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PC5_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0676

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PC5|1|I|G|1674
6PC5|1|I|C|1675
6PC5|1|I|A|1676
6PC5|1|I|A|1677
6PC5|1|I|A|1678
6PC5|1|I|A|1679
6PC5|1|I|U|1680
6PC5|1|I|G|1681
6PC5|1|I|G|1682
*
6PC5|1|I|C|1706
6PC5|1|I|G|1707
*
6PC5|1|I|U|1751
6PC5|1|I|C|1752
*
6PC5|1|I|G|1756
6PC5|1|I|A|1757
6PC5|1|I|U|1758
6PC5|1|I|A|1759
6PC5|1|I|C|1760
6PC5|1|I|C|1761
6PC5|1|I|A|1762
6PC5|1|I|G|1763
6PC5|1|I|C|1764
*
6PC5|1|I|G|1988
6PC5|1|I|G|1989
6PC5|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3