J5_6PC8_002

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

6PC8|1|I|A|532, 6PC8|1|I|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PC8_002 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.093

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6PC8|1|I|C|531
6PC8|1|I|A|532
6PC8|1|I|G|533
*
6PC8|1|I|C|560
6PC8|1|I|G|561
6PC8|1|I|U|562
6PC8|1|I|A|563
6PC8|1|I|C|564
*
6PC8|1|I|G|577
6PC8|1|I|G|578
6PC8|1|I|G|579
*
6PC8|1|I|C|1261
6PC8|1|I|A|1262
*
6PC8|1|I|U|2017
6PC8|1|I|G|2018

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4