J5_6PCH_004

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6PCH|1|I|U|1758, 6PCH|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCH_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0837

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PCH|1|I|G|1674
6PCH|1|I|C|1675
6PCH|1|I|A|1676
6PCH|1|I|A|1677
6PCH|1|I|A|1678
6PCH|1|I|A|1679
6PCH|1|I|U|1680
6PCH|1|I|G|1681
6PCH|1|I|G|1682
*
6PCH|1|I|C|1706
6PCH|1|I|G|1707
*
6PCH|1|I|U|1751
6PCH|1|I|C|1752
*
6PCH|1|I|G|1756
6PCH|1|I|A|1757
6PCH|1|I|U|1758
6PCH|1|I|A|1759
6PCH|1|I|C|1760
6PCH|1|I|C|1761
6PCH|1|I|A|1762
6PCH|1|I|G|1763
6PCH|1|I|C|1764
*
6PCH|1|I|G|1988
6PCH|1|I|G|1989
6PCH|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3