J5_6PCQ_002

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

6PCQ|1|I|A|532, 6PCQ|1|I|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCQ_002 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.0623

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|C|531
6PCQ|1|I|A|532
6PCQ|1|I|G|533
*
6PCQ|1|I|C|560
6PCQ|1|I|G|561
6PCQ|1|I|U|562
6PCQ|1|I|A|563
6PCQ|1|I|C|564
*
6PCQ|1|I|G|577
6PCQ|1|I|G|578
6PCQ|1|I|G|579
*
6PCQ|1|I|C|1261
6PCQ|1|I|A|1262
*
6PCQ|1|I|U|2017
6PCQ|1|I|G|2018

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4