J5_6PCQ_004

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6PCQ|1|I|U|1758, 6PCQ|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCQ_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0657

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PCQ|1|I|G|1674
6PCQ|1|I|C|1675
6PCQ|1|I|A|1676
6PCQ|1|I|A|1677
6PCQ|1|I|A|1678
6PCQ|1|I|A|1679
6PCQ|1|I|U|1680
6PCQ|1|I|G|1681
6PCQ|1|I|G|1682
*
6PCQ|1|I|C|1706
6PCQ|1|I|G|1707
*
6PCQ|1|I|U|1751
6PCQ|1|I|C|1752
*
6PCQ|1|I|G|1756
6PCQ|1|I|A|1757
6PCQ|1|I|U|1758
6PCQ|1|I|A|1759
6PCQ|1|I|C|1760
6PCQ|1|I|C|1761
6PCQ|1|I|A|1762
6PCQ|1|I|G|1763
6PCQ|1|I|C|1764
*
6PCQ|1|I|G|1988
6PCQ|1|I|G|1989
6PCQ|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3