J5_6PCS_004

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6PCS|1|I|U|1758, 6PCS|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCS_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0795

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PCS|1|I|G|1674
6PCS|1|I|C|1675
6PCS|1|I|A|1676
6PCS|1|I|A|1677
6PCS|1|I|A|1678
6PCS|1|I|A|1679
6PCS|1|I|U|1680
6PCS|1|I|G|1681
6PCS|1|I|G|1682
*
6PCS|1|I|C|1706
6PCS|1|I|G|1707
*
6PCS|1|I|U|1751
6PCS|1|I|C|1752
*
6PCS|1|I|G|1756
6PCS|1|I|A|1757
6PCS|1|I|U|1758
6PCS|1|I|A|1759
6PCS|1|I|C|1760
6PCS|1|I|C|1761
6PCS|1|I|A|1762
6PCS|1|I|G|1763
6PCS|1|I|C|1764
*
6PCS|1|I|G|1988
6PCS|1|I|G|1989
6PCS|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3