J5_6PCT_004

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6PCT|1|I|U|1758, 6PCT|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCT_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0658

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PCT|1|I|G|1674
6PCT|1|I|C|1675
6PCT|1|I|A|1676
6PCT|1|I|A|1677
6PCT|1|I|A|1678
6PCT|1|I|A|1679
6PCT|1|I|U|1680
6PCT|1|I|G|1681
6PCT|1|I|G|1682
*
6PCT|1|I|C|1706
6PCT|1|I|G|1707
*
6PCT|1|I|U|1751
6PCT|1|I|C|1752
*
6PCT|1|I|G|1756
6PCT|1|I|A|1757
6PCT|1|I|U|1758
6PCT|1|I|A|1759
6PCT|1|I|C|1760
6PCT|1|I|C|1761
6PCT|1|I|A|1762
6PCT|1|I|G|1763
6PCT|1|I|C|1764
*
6PCT|1|I|G|1988
6PCT|1|I|G|1989
6PCT|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3