J5_6PPF_005

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

6PPF|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PPF_005 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1151

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6PPF|1|A|C|47
6PPF|1|A|G|48
6PPF|1|A|A|49
6PPF|1|A|U|50
6PPF|1|A|G|51
6PPF|1|A|A|52
6PPF|1|A|A|53
6PPF|1|A|G|54
*
6PPF|1|A|C|115
6PPF|1|A|G|116
6PPF|1|A|A|117
6PPF|1|A|A|118
6PPF|1|A|U|119
6PPF|1|A|G|120
*
6PPF|1|A|C|129
6PPF|1|A|A|130
*
6PPF|1|A|U|149
6PPF|1|A|A|150
6PPF|1|A|U|151
*
6PPF|1|A|A|178
6PPF|1|A|A|179
6PPF|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34