J5_6Q8Y_002
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAUG*CGAAUGGC*GAG*CAC*GGCAGC
- Length
- 25 nucleotides
- Bulged bases
- 6Q8Y|1|2|A|93
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Q8Y_002 not in the Motif Atlas
- Homologous match to J5_8P9A_017
- Geometric discrepancy: 0.5074
- The information below is about J5_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Q8Y|1|2|G|53
6Q8Y|1|2|C|54
6Q8Y|1|2|A|55
6Q8Y|1|2|U|56
6Q8Y|1|2|G|57
*
6Q8Y|1|2|C|90
6Q8Y|1|2|G|91
6Q8Y|1|2|A|92
6Q8Y|1|2|A|93
6Q8Y|1|2|U|94
6Q8Y|1|2|G|95
6Q8Y|1|2|G|96
6Q8Y|1|2|C|97
*
6Q8Y|1|2|G|386
6Q8Y|1|2|A|387
6Q8Y|1|2|G|388
*
6Q8Y|1|2|C|409
6Q8Y|1|2|A|410
6Q8Y|1|2|C|411
*
6Q8Y|1|2|G|422
6Q8Y|1|2|G|423
6Q8Y|1|2|C|424
6Q8Y|1|2|A|425
6Q8Y|1|2|G|426
6Q8Y|1|2|C|427
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain S
- 40S ribosomal protein S4-A
- Chain T
- 40S ribosomal protein S6-A
- Chain V
- 40S ribosomal protein S8-A
- Chain d
- 40S ribosomal protein S24-A
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