J5_6Q97_004
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACUAGGCAAAAUGGU*ACG*UC*GAUACCAGCU*AGGCUGU
- Length
- 37 nucleotides
- Bulged bases
- 6Q97|1|1|U|1758, 6Q97|1|1|G|1763, 6Q97|1|1|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|A|1669
6Q97|1|1|C|1670
6Q97|1|1|U|1671
6Q97|1|1|A|1672
6Q97|1|1|G|1673
6Q97|1|1|G|1674
6Q97|1|1|C|1675
6Q97|1|1|A|1676
6Q97|1|1|A|1677
6Q97|1|1|A|1678
6Q97|1|1|A|1679
6Q97|1|1|U|1680
6Q97|1|1|G|1681
6Q97|1|1|G|1682
6Q97|1|1|U|1683
*
6Q97|1|1|A|1705
6Q97|1|1|C|1706
6Q97|1|1|G|1707
*
6Q97|1|1|U|1751
6Q97|1|1|C|1752
*
6Q97|1|1|G|1756
6Q97|1|1|A|1757
6Q97|1|1|U|1758
6Q97|1|1|A|1759
6Q97|1|1|C|1760
6Q97|1|1|C|1761
6Q97|1|1|A|1762
6Q97|1|1|G|1763
6Q97|1|1|C|1764
6Q97|1|1|U|1765
*
6Q97|1|1|A|1987
6Q97|1|1|G|1988
6Q97|1|1|G|1989
6Q97|1|1|C|1990
6Q97|1|1|U|1991
6Q97|1|1|G|1992
6Q97|1|1|U|1993
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
Coloring options: