J5_6Q97_005
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACGGAAAGACCCC*G(2MG)GGAUAACAGGC(PSU)GA*UGGCA(OMC)CUCG(2MA)(PSU)GUCGGCUC*GCGAGC(PSU)GGGUUUAGAA*U(PSU)CGGUCCCUAU
- Length
- 78 nucleotides
- Bulged bases
- 6Q97|1|1|A|2062, 6Q97|1|1|A|2448, 6Q97|1|1|PSU|2504, 6Q97|1|1|U|2506, 6Q97|1|1|U|2609, 6Q97|1|1|U|2613
- QA status
- Modified nucleotides: 2MG, PSU, OMC, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|A|2054
6Q97|1|1|C|2055
6Q97|1|1|G|2056
6Q97|1|1|G|2057
6Q97|1|1|A|2058
6Q97|1|1|A|2059
6Q97|1|1|A|2060
6Q97|1|1|G|2061
6Q97|1|1|A|2062
6Q97|1|1|C|2063
6Q97|1|1|C|2064
6Q97|1|1|C|2065
6Q97|1|1|C|2066
*
6Q97|1|1|G|2444
6Q97|1|1|2MG|2445
6Q97|1|1|G|2446
6Q97|1|1|G|2447
6Q97|1|1|A|2448
6Q97|1|1|U|2449
6Q97|1|1|A|2450
6Q97|1|1|A|2451
6Q97|1|1|C|2452
6Q97|1|1|A|2453
6Q97|1|1|G|2454
6Q97|1|1|G|2455
6Q97|1|1|C|2456
6Q97|1|1|PSU|2457
6Q97|1|1|G|2458
6Q97|1|1|A|2459
*
6Q97|1|1|U|2493
6Q97|1|1|G|2494
6Q97|1|1|G|2495
6Q97|1|1|C|2496
6Q97|1|1|A|2497
6Q97|1|1|OMC|2498
6Q97|1|1|C|2499
6Q97|1|1|U|2500
6Q97|1|1|C|2501
6Q97|1|1|G|2502
6Q97|1|1|2MA|2503
6Q97|1|1|PSU|2504
6Q97|1|1|G|2505
6Q97|1|1|U|2506
6Q97|1|1|C|2507
6Q97|1|1|G|2508
6Q97|1|1|G|2509
6Q97|1|1|C|2510
6Q97|1|1|U|2511
6Q97|1|1|C|2512
*
6Q97|1|1|G|2574
6Q97|1|1|C|2575
6Q97|1|1|G|2576
6Q97|1|1|A|2577
6Q97|1|1|G|2578
6Q97|1|1|C|2579
6Q97|1|1|PSU|2580
6Q97|1|1|G|2581
6Q97|1|1|G|2582
6Q97|1|1|G|2583
6Q97|1|1|U|2584
6Q97|1|1|U|2585
6Q97|1|1|U|2586
6Q97|1|1|A|2587
6Q97|1|1|G|2588
6Q97|1|1|A|2589
6Q97|1|1|A|2590
*
6Q97|1|1|U|2604
6Q97|1|1|PSU|2605
6Q97|1|1|C|2606
6Q97|1|1|G|2607
6Q97|1|1|G|2608
6Q97|1|1|U|2609
6Q97|1|1|C|2610
6Q97|1|1|C|2611
6Q97|1|1|C|2612
6Q97|1|1|U|2613
6Q97|1|1|A|2614
6Q97|1|1|U|2615
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain 6
- Nascent peptide
- Chain 7
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
- Chain C
- 50S ribosomal protein L3
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: