J5_6Q97_010

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6Q97_010 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1408

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6Q97|1|2|C|36
6Q97|1|2|U|37
6Q97|1|2|G|38
6Q97|1|2|G|39
*
6Q97|1|2|C|403
6Q97|1|2|G|404
6Q97|1|2|U|405
6Q97|1|2|G|406
*
6Q97|1|2|C|436
6Q97|1|2|U|437
6Q97|1|2|U|438
6Q97|1|2|U|439
6Q97|1|2|C|440
6Q97|1|2|A|441
6Q97|1|2|G|442
*
6Q97|1|2|C|492
6Q97|1|2|A|493
6Q97|1|2|G|494
6Q97|1|2|A|495
6Q97|1|2|A|496
6Q97|1|2|G|497
6Q97|1|2|A|498
6Q97|1|2|A|499
6Q97|1|2|G|500
*
6Q97|1|2|C|545
6Q97|1|2|A|546
6Q97|1|2|A|547
6Q97|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12