J5_6Q97_011

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GACU*AGGCAG

Length

25 nucleotides

Bulged bases

6Q97|1|2|A|109, 6Q97|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|C|58
6Q97|1|2|A|59
6Q97|1|2|A|60
6Q97|1|2|G|61
*
6Q97|1|2|C|106
6Q97|1|2|G|107
6Q97|1|2|G|108
6Q97|1|2|A|109
6Q97|1|2|C|110
6Q97|1|2|G|111
6Q97|1|2|G|112
6Q97|1|2|G|113
*
6Q97|1|2|C|314
6Q97|1|2|A|315
6Q97|1|2|C|316
*
6Q97|1|2|G|337
6Q97|1|2|A|338
6Q97|1|2|C|339
6Q97|1|2|U|340
*
6Q97|1|2|A|349
6Q97|1|2|G|350
6Q97|1|2|G|351
6Q97|1|2|C|352
6Q97|1|2|A|353
6Q97|1|2|G|354

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20