J5_6Q97_018

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCACGAAG*UUGAC*GGU*AGGUCAUAGUGAUCC*GCUCAAC

Length

38 nucleotides

Bulged bases

6Q97|1|1|A|2288, 6Q97|1|1|U|2390, 6Q97|1|1|G|2391, 6Q97|1|1|C|2422, 6Q97|1|1|C|2424, 6Q97|1|1|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|G|2282
6Q97|1|1|C|2283
6Q97|1|1|A|2284
6Q97|1|1|C|2285
6Q97|1|1|G|2286
6Q97|1|1|A|2287
6Q97|1|1|A|2288
6Q97|1|1|G|2289
*
6Q97|1|1|U|2343
6Q97|1|1|U|2344
6Q97|1|1|G|2345
6Q97|1|1|A|2346
6Q97|1|1|C|2347
*
6Q97|1|1|G|2370
6Q97|1|1|G|2371
6Q97|1|1|U|2372
*
6Q97|1|1|A|2381
6Q97|1|1|G|2382
6Q97|1|1|G|2383
6Q97|1|1|U|2384
6Q97|1|1|C|2385
6Q97|1|1|A|2386
6Q97|1|1|U|2387
6Q97|1|1|A|2388
6Q97|1|1|G|2389
6Q97|1|1|U|2390
6Q97|1|1|G|2391
6Q97|1|1|A|2392
6Q97|1|1|U|2393
6Q97|1|1|C|2394
6Q97|1|1|C|2395
*
6Q97|1|1|G|2421
6Q97|1|1|C|2422
6Q97|1|1|U|2423
6Q97|1|1|C|2424
6Q97|1|1|A|2425
6Q97|1|1|A|2426
6Q97|1|1|C|2427

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain L

50S ribosomal protein L15

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35