J5_6Q98_001
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAUCAUU*AAUGAGG
- Length
- 30 nucleotides
- Bulged bases
- 6Q98|1|1|U|50, 6Q98|1|1|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|C|47
6Q98|1|1|G|48
6Q98|1|1|A|49
6Q98|1|1|U|50
6Q98|1|1|G|51
6Q98|1|1|A|52
6Q98|1|1|A|53
6Q98|1|1|G|54
*
6Q98|1|1|C|116
6Q98|1|1|G|117
6Q98|1|1|A|118
6Q98|1|1|A|119
6Q98|1|1|U|120
6Q98|1|1|G|121
*
6Q98|1|1|C|130
6Q98|1|1|A|131
*
6Q98|1|1|U|148
6Q98|1|1|A|149
6Q98|1|1|U|150
6Q98|1|1|C|151
6Q98|1|1|A|152
6Q98|1|1|U|153
6Q98|1|1|U|154
*
6Q98|1|1|A|172
6Q98|1|1|A|173
6Q98|1|1|U|174
6Q98|1|1|G|175
6Q98|1|1|A|176
6Q98|1|1|G|177
6Q98|1|1|G|178
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain X
- 50S ribosomal protein L28
- Chain d
- 50S ribosomal protein L34
Coloring options: