J5_6Q98_003
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGACUU*AGACCCGAAACC*GGAGAUAGCUGGUUC*GC*GCGAAUG
- Length
- 42 nucleotides
- Bulged bases
- 6Q98|1|1|G|805, 6Q98|1|1|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|C|584
6Q98|1|1|G|585
6Q98|1|1|A|586
6Q98|1|1|C|587
6Q98|1|1|U|588
6Q98|1|1|U|589
*
6Q98|1|1|A|668
6Q98|1|1|G|669
6Q98|1|1|A|670
6Q98|1|1|C|671
6Q98|1|1|C|672
6Q98|1|1|C|673
6Q98|1|1|G|674
6Q98|1|1|A|675
6Q98|1|1|A|676
6Q98|1|1|A|677
6Q98|1|1|C|678
6Q98|1|1|C|679
*
6Q98|1|1|G|798
6Q98|1|1|G|799
6Q98|1|1|A|800
6Q98|1|1|G|801
6Q98|1|1|A|802
6Q98|1|1|U|803
6Q98|1|1|A|804
6Q98|1|1|G|805
6Q98|1|1|C|806
6Q98|1|1|U|807
6Q98|1|1|G|808
6Q98|1|1|G|809
6Q98|1|1|U|810
6Q98|1|1|U|811
6Q98|1|1|C|812
*
6Q98|1|1|G|1195
6Q98|1|1|C|1196
*
6Q98|1|1|G|1250
6Q98|1|1|C|1251
6Q98|1|1|G|1252
6Q98|1|1|A|1253
6Q98|1|1|A|1254
6Q98|1|1|U|1255
6Q98|1|1|G|1256
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain e
- 50S ribosomal protein L35
Coloring options: