Loop J5_6Q98

3D structure

PDB id: 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.3 Å

Loop

Sequence: GGUUCC*GGGUGAGUCGACCCCUAAGGC*GUCGAUGGGAAAC*GUACU*AAUCGUAC
Length: 53 nucleotides
Bulged bases: 6Q98|1|1|G|1341, 6Q98|1|1|C|1350, 6Q98|1|1|U|1379
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6Q98|1|1|G|1310
6Q98|1|1|G|1311
6Q98|1|1|U|1312
6Q98|1|1|U|1313
6Q98|1|1|C|1314
6Q98|1|1|C|1315
*
6Q98|1|1|G|1337
6Q98|1|1|G|1338
6Q98|1|1|G|1339
6Q98|1|1|U|1340
6Q98|1|1|G|1341
6Q98|1|1|A|1342
6Q98|1|1|G|1343
6Q98|1|1|U|1344
6Q98|1|1|C|1345
6Q98|1|1|G|1346
6Q98|1|1|A|1347
6Q98|1|1|C|1348
6Q98|1|1|C|1349
6Q98|1|1|C|1350
6Q98|1|1|C|1351
6Q98|1|1|U|1352
6Q98|1|1|A|1353
6Q98|1|1|A|1354
6Q98|1|1|G|1355
6Q98|1|1|G|1356
6Q98|1|1|C|1357
*
6Q98|1|1|G|1374
6Q98|1|1|U|1375
6Q98|1|1|C|1376
6Q98|1|1|G|1377
6Q98|1|1|A|1378
6Q98|1|1|U|1379
6Q98|1|1|G|1380
6Q98|1|1|G|1381
6Q98|1|1|G|1382
6Q98|1|1|A|1383
6Q98|1|1|A|1384
6Q98|1|1|A|1385
6Q98|1|1|C|1386
*
6Q98|1|1|G|1401
6Q98|1|1|U|1402
6Q98|1|1|A|1403
6Q98|1|1|C|1404
6Q98|1|1|U|1405
*
6Q98|1|1|A|1597
6Q98|1|1|A|1598
6Q98|1|1|U|1599
6Q98|1|1|C|1600
6Q98|1|1|G|1601
6Q98|1|1|U|1602
6Q98|1|1|A|1603
6Q98|1|1|C|1604

Current chains

Chain 1: 23S ribosomal RNA

Nearby chains

Chain B: 50S ribosomal protein L2
Chain T: 50S ribosomal protein L23
Chain d: 50S ribosomal protein L34

J5_6Q98_004