J5_6Q98_007

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

ACGCUGG*CGUG*CUUUC*GAAGC*GCAAGCGU

Length

29 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|A|33
6Q98|1|2|C|34
6Q98|1|2|G|35
6Q98|1|2|C|36
6Q98|1|2|U|37
6Q98|1|2|G|38
6Q98|1|2|G|39
*
6Q98|1|2|C|403
6Q98|1|2|G|404
6Q98|1|2|U|405
6Q98|1|2|G|406
*
6Q98|1|2|C|436
6Q98|1|2|U|437
6Q98|1|2|U|438
6Q98|1|2|U|439
6Q98|1|2|C|440
*
6Q98|1|2|G|497
6Q98|1|2|A|498
6Q98|1|2|A|499
6Q98|1|2|G|500
6Q98|1|2|C|501
*
6Q98|1|2|G|544
6Q98|1|2|C|545
6Q98|1|2|A|546
6Q98|1|2|A|547
6Q98|1|2|G|548
6Q98|1|2|C|549
6Q98|1|2|G|550
6Q98|1|2|U|551

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12