J5_6Q98_010
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGCU*AGGC
- Length
- 27 nucleotides
- Bulged bases
- 6Q98|1|1|U|1758, 6Q98|1|1|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|G|1674
6Q98|1|1|C|1675
6Q98|1|1|A|1676
6Q98|1|1|A|1677
6Q98|1|1|A|1678
6Q98|1|1|A|1679
6Q98|1|1|U|1680
6Q98|1|1|G|1681
6Q98|1|1|G|1682
*
6Q98|1|1|C|1706
6Q98|1|1|G|1707
*
6Q98|1|1|U|1751
6Q98|1|1|C|1752
*
6Q98|1|1|G|1756
6Q98|1|1|A|1757
6Q98|1|1|U|1758
6Q98|1|1|A|1759
6Q98|1|1|C|1760
6Q98|1|1|C|1761
6Q98|1|1|A|1762
6Q98|1|1|G|1763
6Q98|1|1|C|1764
6Q98|1|1|U|1765
*
6Q98|1|1|A|1987
6Q98|1|1|G|1988
6Q98|1|1|G|1989
6Q98|1|1|C|1990
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
Coloring options: