J5_6Q9A_002
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6Q9A|1|1|A|532, 6Q9A|1|1|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Q9A_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0965
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Q9A|1|1|C|531
6Q9A|1|1|A|532
6Q9A|1|1|G|533
*
6Q9A|1|1|C|560
6Q9A|1|1|G|561
6Q9A|1|1|U|562
6Q9A|1|1|A|563
6Q9A|1|1|C|564
*
6Q9A|1|1|G|577
6Q9A|1|1|G|578
6Q9A|1|1|G|579
*
6Q9A|1|1|C|1261
6Q9A|1|1|A|1262
*
6Q9A|1|1|U|2017
6Q9A|1|1|G|2018
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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