J5_6Q9A_004
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 6Q9A|1|1|U|1758, 6Q9A|1|1|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Q9A_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1141
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Q9A|1|1|G|1674
6Q9A|1|1|C|1675
6Q9A|1|1|A|1676
6Q9A|1|1|A|1677
6Q9A|1|1|A|1678
6Q9A|1|1|A|1679
6Q9A|1|1|U|1680
6Q9A|1|1|G|1681
6Q9A|1|1|G|1682
*
6Q9A|1|1|C|1706
6Q9A|1|1|G|1707
*
6Q9A|1|1|U|1751
6Q9A|1|1|C|1752
*
6Q9A|1|1|G|1756
6Q9A|1|1|A|1757
6Q9A|1|1|U|1758
6Q9A|1|1|A|1759
6Q9A|1|1|C|1760
6Q9A|1|1|C|1761
6Q9A|1|1|A|1762
6Q9A|1|1|G|1763
6Q9A|1|1|C|1764
*
6Q9A|1|1|G|1988
6Q9A|1|1|G|1989
6Q9A|1|1|C|1990
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
Coloring options: