3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
Length
35 nucleotides
Bulged bases
6QDW|1|b|A|2066, 6QDW|1|b|A|2452, 6QDW|1|b|U|2453, 6QDW|1|b|U|2613
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6QDW|1|b|G|2061
6QDW|1|b|A|2062
6QDW|1|b|A|2063
6QDW|1|b|A|2064
6QDW|1|b|G|2065
6QDW|1|b|A|2066
6QDW|1|b|C|2067
6QDW|1|b|C|2068
*
6QDW|1|b|G|2450
6QDW|1|b|G|2451
6QDW|1|b|A|2452
6QDW|1|b|U|2453
6QDW|1|b|A|2454
6QDW|1|b|A|2455
6QDW|1|b|C|2456
6QDW|1|b|A|2457
*
6QDW|1|b|U|2504
6QDW|1|b|C|2505
6QDW|1|b|G|2506
6QDW|1|b|A|2507
6QDW|1|b|U|2508
6QDW|1|b|G|2509
6QDW|1|b|U|2510
*
6QDW|1|b|G|2587
6QDW|1|b|U|2588
6QDW|1|b|U|2589
6QDW|1|b|U|2590
6QDW|1|b|A|2591
6QDW|1|b|G|2592
*
6QDW|1|b|C|2610
6QDW|1|b|G|2611
6QDW|1|b|G|2612
6QDW|1|b|U|2613
6QDW|1|b|C|2614
6QDW|1|b|C|2615

Current chains

Chain b
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L32
Chain c
50S ribosomal protein L2
Chain d
50S ribosomal protein L3
Chain e
50S ribosomal protein L4
Chain l
50S ribosomal protein L15
Chain m
50S ribosomal protein L16
Chain s
50S ribosomal protein L22
Chain v
Transfer RNA; tRNA
Chain z
Gamma-crystallin B

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1209 s