J5_6QDW_005
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 6QDW|1|b|A|2066, 6QDW|1|b|A|2452, 6QDW|1|b|U|2453, 6QDW|1|b|U|2613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QDW|1|b|G|2061
6QDW|1|b|A|2062
6QDW|1|b|A|2063
6QDW|1|b|A|2064
6QDW|1|b|G|2065
6QDW|1|b|A|2066
6QDW|1|b|C|2067
6QDW|1|b|C|2068
*
6QDW|1|b|G|2450
6QDW|1|b|G|2451
6QDW|1|b|A|2452
6QDW|1|b|U|2453
6QDW|1|b|A|2454
6QDW|1|b|A|2455
6QDW|1|b|C|2456
6QDW|1|b|A|2457
*
6QDW|1|b|U|2504
6QDW|1|b|C|2505
6QDW|1|b|G|2506
6QDW|1|b|A|2507
6QDW|1|b|U|2508
6QDW|1|b|G|2509
6QDW|1|b|U|2510
*
6QDW|1|b|G|2587
6QDW|1|b|U|2588
6QDW|1|b|U|2589
6QDW|1|b|U|2590
6QDW|1|b|A|2591
6QDW|1|b|G|2592
*
6QDW|1|b|C|2610
6QDW|1|b|G|2611
6QDW|1|b|G|2612
6QDW|1|b|U|2613
6QDW|1|b|C|2614
6QDW|1|b|C|2615
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain m
- 50S ribosomal protein L16
- Chain s
- 50S ribosomal protein L22
- Chain v
- Transfer RNA; tRNA
- Chain z
- Gamma-crystallin B
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