J5_6QIK_003
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6QIK|1|A|U|719, 6QIK|1|A|A|784, 6QIK|1|A|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6QIK_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0869
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6QIK|1|A|C|675
6QIK|1|A|G|676
6QIK|1|A|A|677
6QIK|1|A|G|678
*
6QIK|1|A|C|702
6QIK|1|A|G|703
6QIK|1|A|U|704
6QIK|1|A|A|705
6QIK|1|A|A|706
*
6QIK|1|A|U|713
6QIK|1|A|G|714
6QIK|1|A|A|715
6QIK|1|A|A|716
6QIK|1|A|C|717
6QIK|1|A|G|718
6QIK|1|A|U|719
6QIK|1|A|A|720
6QIK|1|A|G|721
*
6QIK|1|A|C|749
6QIK|1|A|G|750
6QIK|1|A|A|751
*
6QIK|1|A|U|782
6QIK|1|A|A|783
6QIK|1|A|A|784
6QIK|1|A|G|785
6QIK|1|A|A|786
6QIK|1|A|G|787
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L28
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L29
- Chain h
- 60S ribosomal protein L36-A
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