3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6QNQ_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.1144
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6QNQ|1|13|C|36
6QNQ|1|13|U|37
6QNQ|1|13|G|38
6QNQ|1|13|G|39
*
6QNQ|1|13|C|403
6QNQ|1|13|U|404
6QNQ|1|13|U|405
6QNQ|1|13|G|406
*
6QNQ|1|13|C|436
6QNQ|1|13|U|437
6QNQ|1|13|G|438
6QNQ|1|13|A|439
6QNQ|1|13|A|440
6QNQ|1|13|C|442
*
6QNQ|1|13|G|492
6QNQ|1|13|G|493
6QNQ|1|13|U|494
6QNQ|1|13|A|495
6QNQ|1|13|A|496
6QNQ|1|13|U|497
6QNQ|1|13|A|498
6QNQ|1|13|G|500
*
6QNQ|1|13|C|545
6QNQ|1|13|G|546
6QNQ|1|13|A|547
6QNQ|1|13|G|548

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 3E
30S ribosomal protein S4
Chain 3I
30S ribosomal protein S12
Chain 69
50S ribosomal protein L9

Coloring options:


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