3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
6QNQ|1|14|U|2076, 6QNQ|1|14|G|2428, 6QNQ|1|14|G|2429, 6QNQ|1|14|A|2430, 6QNQ|1|14|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6QNQ_009 not in the Motif Atlas
Homologous match to J5_9DFE_007
Geometric discrepancy: 0.103
The information below is about J5_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.1
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6QNQ|1|14|U|2074
6QNQ|1|14|U|2075
6QNQ|1|14|U|2076
6QNQ|1|14|A|2077
*
6QNQ|1|14|U|2243
6QNQ|1|14|U|2244
6QNQ|1|14|U|2245
6QNQ|1|14|G|2246
*
6QNQ|1|14|C|2258
6QNQ|1|14|G|2259
*
6QNQ|1|14|C|2281
6QNQ|1|14|G|2282
*
6QNQ|1|14|C|2427
6QNQ|1|14|G|2428
6QNQ|1|14|G|2429
6QNQ|1|14|A|2430
6QNQ|1|14|U|2431
6QNQ|1|14|A|2432
6QNQ|1|14|A|2433
6QNQ|1|14|A|2434
6QNQ|1|14|A|2435

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain 35
50S ribosomal protein L15
Chain 3L
Transfer RNA; tRNA
Chain E5
50S ribosomal protein L27
Chain F5
50S ribosomal protein L28
Chain K5
50S ribosomal protein L33

Coloring options:


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