J5_6QNR_017
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 6QNR|1|1H|G|1790, 6QNR|1|1H|G|1795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6QNR_017 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0795
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6QNR|1|1H|G|1722
6QNR|1|1H|C|1723
6QNR|1|1H|A|1724
6QNR|1|1H|A|1725
6QNR|1|1H|G|1726
6QNR|1|1H|U|1727
6QNR|1|1H|U|1728
6QNR|1|1H|G|1729
6QNR|1|1H|G|1730
*
6QNR|1|1H|U|1754
6QNR|1|1H|G|1755
*
6QNR|1|1H|C|1783
6QNR|1|1H|C|1784
*
6QNR|1|1H|G|1788
6QNR|1|1H|U|1789
6QNR|1|1H|G|1790
6QNR|1|1H|A|1791
6QNR|1|1H|A|1792
6QNR|1|1H|C|1793
6QNR|1|1H|A|1794
6QNR|1|1H|G|1795
6QNR|1|1H|G|1796
*
6QNR|1|1H|C|2011
6QNR|1|1H|G|2012
6QNR|1|1H|C|2013
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 21
- 50S ribosomal protein L3
- Chain 68
- 50S ribosomal protein L14
- Chain B8
- 50S ribosomal protein L19
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