J5_6QT0_002
3D structure
- PDB id
- 6QT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6QT0|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6QT0_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0717
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6QT0|1|A|G|658
6QT0|1|A|G|659
6QT0|1|A|A|660
6QT0|1|A|G|661
6QT0|1|A|U|662
6QT0|1|A|C|663
*
6QT0|1|A|G|799
6QT0|1|A|G|800
6QT0|1|A|A|801
6QT0|1|A|C|802
*
6QT0|1|A|G|941
6QT0|1|A|U|942
6QT0|1|A|U|943
6QT0|1|A|C|944
*
6QT0|1|A|G|1375
6QT0|1|A|C|1376
*
6QT0|1|A|G|1431
6QT0|1|A|C|1432
6QT0|1|A|A|1433
6QT0|1|A|G|1434
6QT0|1|A|A|1435
6QT0|1|A|U|1436
6QT0|1|A|C|1437
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L28
- Chain O
- 60S ribosomal protein L15-A
- Chain e
- 60S ribosomal protein L32
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: